Genomics

Sequencing Studies Implicate Inherited Mutations in Autism

Source: 
SFARI
Date Published: 
January 23, 2013
Abstract: 

SFARI: Rare, inherited mutations contribute to a significant proportion of autism cases according to two new studies published in Neuron.

Identification of Rare Recurrent Copy Number Variants in High-Risk Autism Families and Their Prevalence in a Large ASD Population

Source: 
PLOS One
Date Published: 
January 14, 2013
Abstract: 

Researchers discover 25 new autism-linked copy number variants.

Structure, Function and Diversity of The Healthy Human Microbiome

Source: 
Nature
Date Published: 
June 13, 2012
Abstract: 

"Studies of the human microbiome have revealed that even healthy individuals differ remarkably in the microbes that occupy habitats such as the gut, skin and vagina. Much of this diversity remains unexplained, although diet, environment, host genetics and early microbial exposure have all been implicated. Accordingly, to characterize the ecology of human-associated microbial communities, the Human Microbiome Project has analysed the largest cohort and set of distinct, clinically relevant body habitats so far. We found the diversity and abundance of each habitat's signature microbes to vary widely even among healthy subjects, with strong niche specialization both within and among individuals. The project encountered an estimated 81-99% of the genera, enzyme families and community configurations occupied by the healthy Western microbiome. Metagenomic carriage of metabolic pathways was stable among individuals despite variation in community structure, and ethnic/racial background proved to be one of the strongest associations of both pathways and microbes with clinical metadata. These results thus delineate the range of structural and functional configurations normal in the microbial communities of a healthy population, enabling future characterization of the epidemiology, ecology and translational applications of the human microbiome."

Predicting the Diagnosis of Autism Spectrum Disorder Using Gene Pathway Analysis

Source: 
Molecular Psychiatry
Date Published: 
September 11, 2012
Abstract: 

"The current investigation interrogated single-nucleotide polymorphisms (SNPs) of individuals with ASD from the Autism Genetic Resource Exchange (AGRE) database. SNPs were mapped to Kyoto Encyclopedia of Genes and Genomes (KEGG)-derived pathways to identify affected cellular processes and develop a diagnostic test. "

An Integrated Encyclopedia of DNA Elements in the Human Genome

Source: 
Nature
Date Published: 
September 6, 2012
Abstract: 

"The human genome encodes the blueprint of life, but the function of the vast majority of its nearly three billion bases is unknown. The Encyclopedia of DNA Elements (ENCODE) project has systematically mapped regions of transcription, transcription factor association, chromatin structure and histone modification. These data enabled us to assign biochemical functions for 80% of the genome, in particular outside of the well-studied protein-coding regions. Many discovered candidate regulatory elements are physically associated with one another and with expressed genes, providing new insights into the mechanisms of gene regulation. The newly identified elements also show a statistical correspondence to sequence variants linked to human disease, and can thereby guide interpretation of this variation. Overall, the project provides new insights into the organization and regulation of our genes and genome, and is an expansive resource of functional annotations for biomedical research."

Autism Genetic Testing: A Qualitative Study of Awareness, Attitudes, and Experiences among Parents of Children with Autism Spectrum Disorders.

Source: 
Genetics in Medicine
Date Published: 
January 3, 2013
Abstract: 

This study provides insight into awareness, perspectives and experiences of ASD genetic testing among parents of autistic children.

The Autism Sequencing Consortium: Large-Scale, High-Throughput Sequencing in Autism Spectrum Disorders

Source: 
Neuron
Date Published: 
December 20, 2012
Abstract: 

Dr. Joseph Buxbaum and team discuss the current state of ASD gene discovery and the benefits of a genomic technology called high-throughput sequencing.

Whole-Genome Sequencing in Autism Identifies Hot Spots for De Novo Germline Mutation

Source: 
Cell
Date Published: 
December 21, 2012
Abstract: 

UCSD researchers suggest genes linked to autism have higher mutation rates than other genes.

Genomic Technology Reveals Hundreds of Autism Gene Mutations

Source: 
Laboratory Equipment
Date Published: 
December 20, 2012
Abstract: 

ASF SAB member Dr. Joe Buxbaum on his new gene discoveries using high-throughput sequencing:
"By identifying the many genetic roots of this disorder, we can better understand its biology, which in turn will allow us to develop more tailored treatments for individuals. It is a transformative time for genetic research in autism."

Multiplex Targeted Sequencing Identifies Recurrently Mutated Genes in Autism Spectrum Disorders

Source: 
Science
Date Published: 
November 15, 2012
Abstract: 

De novo mutations in six genes may contribute to 1% of simplex ASD cases.